Segmentation by
TotalSegmentator
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Automatically segment various anatomical structures from CT and MRI scans using TotalSegmentator.
Total:
117 main classes
Total (MR):
50 main classes for MR images
Lung vessels:
lung vessels, lung trachea, bronchi
Body:
body, body trunk, body extremities, skin
Body (MR):
body trunk, body extremities
Vertebrae (MR):
sacrum, vertebrae C1–C7, T1–T12, L1–L5
Cerebral bleed:
intracerebral hemorrhage
Hip implant:
hip implant segmentation
Pleural and pericardial effusion:
pleural effusion, pericardial effusion
Head glands and cavities:
eye left, eye right, eye lens left, eye lens right, optic nerve left, optic nerve right, parotid gland left, parotid gland right, submandibular gland left, submandibular gland right, nasopharynx, oropharynx, hypopharynx, nasal cavity left, nasal cavity right, auditory canal left, auditory canal right, soft palate, hard palate
Head muscles:
masseter left, masseter right, temporalis left, temporalis right, lateral pterygoid left, lateral pterygoid right, medial pterygoid left, medial pterygoid right, tongue, digastric left, digastric right
Head and neck bones and vessels:
larynx air, thyroid cartilage, hyoid, cricoid cartilage, zygomatic arch left, zygomatic arch right, styloid process left, styloid process right, internal carotid artery left, internal carotid artery right, internal jugular vein left, internal jugular vein right
Head and neck muscles:
sternocleidomastoid left, sternocleidomastoid right, superior pharyngeal constrictor, middle pharyngeal constrictor, inferior pharyngeal constrictor, trapezius left, trapezius right, platysma left, platysma right, levator scapulae left, levator scapulae right, anterior scalene left, anterior scalene right, middle scalene left, middle scalene right, posterior scalene left, posterior scalene right, sternothyroid left, sternothyroid right, thyrohyoid left, thyrohyoid right, prevertebral left, prevertebral right
Liver vessels and tumors:
liver vessels, liver tumor
Oculomotor muscles:
skull, eyeball left, eyeball right, optic nerve left, optic nerve right, lateral rectus muscle, superior rectus muscle, inferior rectus muscle, medial rectus muscle, superior oblique muscle, inferior oblique muscle, levator palpebrae superioris
Lung nodules:
lung, lung nodules
Kidney cysts:
kidney cyst left, kidney cyst right
Breasts:
breast tissue
Liver segments:
liver segment 1–8 (Couinaud segmentation)
Liver segments (MR):
liver segment 1–8 for MR images
Craniofacial structures:
mandible, skull, head, maxillary sinus, frontal sinus, teeth upper, teeth lower
Abdominal muscles:
pectoralis major, rectus abdominis, serratus anterior, latissimus dorsi, trapezius, external oblique, internal oblique, erector spinae, transversospinalis, psoas major, quadratus lumborum
Teeth and dental structures:
jawbones, alveolar canals, maxillary sinuses, pharynx, dental crowns, bridges, implants, individual teeth and pulp structures
Trunk cavities:
abdominal cavity, thoracic cavity, pericardium, mediastinum
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TotalSegmentator
Pro modules
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Automatically segment anatomical structures from CT and MRI scans using the optional TotalSegmentator Pro solutions.
Heart chambers (high resolution):
myocardium, atrium left, ventricle left, atrium right, ventricle right, aorta, pulmonary artery – trained on sub-millimeter resolution
Appendicular bones:
patella, tibia, fibula, tarsal bones, metatarsals, foot phalanges, ulna, radius, carpal bones, metacarpals, hand phalanges
Appendicular bones (MR):
patella, tibia, fibula, tarsal bones, metatarsals, foot phalanges, ulna, radius – for MR images
Tissue types:
subcutaneous fat, torso fat, skeletal muscle
Tissue types (MR):
subcutaneous fat, torso fat, skeletal muscle – for MR images
Tissue types (4 classes):
subcutaneous fat, torso fat, skeletal muscle, intermuscular fat
Brain structures (CT):
brainstem, subarachnoid space, venous sinuses, septum pellucidum, cerebellum, caudate nucleus, lentiform nucleus, insular cortex, internal capsule, ventricles, central sulcus, frontal lobe, parietal lobe, occipital lobe, temporal lobe, thalamus
Vertebral bodies and discs:
vertebral bodies of all vertebrae (without vertebral arch), intervertebral discs
Face region (CT):
face region segmentation for anonymization
Face region (MR):
face region segmentation for anonymization
Thigh and shoulder muscles:
quadriceps femoris (left and right), medial thigh compartment (left and right), posterior thigh compartment (left and right), sartorius (left and right), deltoid, supraspinatus, infraspinatus, subscapularis, coracobrachialis, trapezius, pectoralis minor, serratus anterior, teres major, triceps brachii
Thigh and shoulder muscles (MR):
quadriceps femoris (left and right), medial thigh compartment (left and right), posterior thigh compartment (left and right), sartorius (left and right), deltoid, supraspinatus, infraspinatus, subscapularis, coracobrachialis, trapezius, pectoralis minor, serratus anterior, teres major, triceps brachii – for MR images
Coronary arteries:
coronary artery segmentation (also works on non-contrast images)
Brain aneurysm:
aneurysm detection for TOF MRI images – research use only (CC BY-NC 4.0 license, no commercial license available)
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